Lab of Molecular Systematics

About

The lab was found in 1991. Initially the major task was to study communities of benthic organisms. Soon the activity had been shifted more towards using molecular biological methods and traits both for taxonomic purposes and analysis of different evolutionary problems. Accordingly, methods and approaches of molecular phylogenetics became more and more intesely used.

With the accumulation of data on nucleotide sequences of couple of genes in several most diverse animal groups it became possible to address more questions at population level. This allows one to start matching evolutionary (including speciations/extinctions and demographic events) history of a species to the very well studied geological history of Lake Baikal. Very recently the increasing amount of data opened way to ctudy the role of between-species ecological interactions within communities. This returns us to the questions of the starting period of the group.

Increasing complexity of biological questions adressed and data processing methods employed requires more and more sophisticated statistics and understanding tools. Thus appeared the third major direction of studies: computer simulations.

amphipods

Selected papers

  1. Fazalova Varvara, Bruno Nevado, Tatiana Peretolchina, Jeanna Petunina, Dmitry Sherbakov When environmental changes do not cause geographic separation of fauna: differential responses of Baikalian invertebrates. // BMC Evolutionary Biology; 2010; 10(320):1-12.
  2. Kravtsova L. S., Weinberg I. V., Khanaev I. V., Sherbakov D. Yu. , Semovsky S. V., Adov F. V. , Rozhkova N. A. , Pomazkina G.V ., Shevelyova N. G., Kaygorodova I. A. The formation of a fouling community on artificial substrate in Lake Baikal . // Hydrobiologia, Springer Netherlands; 2006; 568(1):51-55.
  3. Kaygorodova I. A. , Sherbakov D. Yu. , Martin P. Molecular phylogeny of Baikalian Lumbriculidae (Oligochaeta): evidence for recent explosive speciation. // Comparative Cytogenetics; 2007; 1(1):71-84
  4. Перетолчина Т.Е., Букин Т.Я.,Ситникова Т.Я., Щербаков Д.Ю. Генетическая дифференциация эндемичного байкальского вида Baicalia Carinata (Mollusca : Caenogastropoda). // Генетика; 2007; 43(12):1-9.
  5. Bukin Ju.S., Pudovkina T.A., Sherbakov D.Ju., Sitnikova T.Ya. Genetic Flows in a Structured One-Dimensional Population: Simulation and Real Data on Baikalian Polychaetes M. Godlewskii. // In Silico Biology ; 2007; 7(3):277-284.
  6. Дарикова Ю.А., Щербаков Д.Ю.(Darikova Yu.A., Sherbakov D.Yu.) Эволюция интрона гена фосфофруктокиназы у брюхоногих моллюсков семейства Baicalidae.(Evolution of the Phosphofructokinase Gene Introne in Gastropods of Family Baicalidae). //Молекуляр. биология; 2009; 43(5):838-844
  7. Зубаков Д.Ю., Щербаков Д.Ю., Ситникова Т.Я. Анализ филогенетических взаимоотношений байкальских эндемичных моллюсков семейства Baicaliidae, Clessin 1878 (Gastropoda, Pectinibranchia) на основе нуклеотидных последовательностей фрагмента митохондриального гена CO 1. // Молекуляр. биология; 1997; 31(6):1092-1097.
  8. Sherbakov D.Yu., Kamaltynov R.M., Ogarkov J.B., Verheyen E. Patterns of evolutionary change in Baikalian Gammaridae inferred from DNA sequences (Crustacea, Amphipoda). // Molecular Phylogeny and Evolution; 1998; 10(2):160-167
  9. Mashiko K., Kamaltynov R.M., Sherbakov D.Yu., Morino H. Genetic separation of gammarid (Eulimnogammarus cyaneus) populations in Lake Baikal. // Biodiversity, Phylogeny and Environmental in Lake Baikal; 1999;67-79
  10. Sherbakov D.Yu. Molecular phylogenetic studies on the origin of biodiversity in Lake Baikal. // Trends in Ecology & Evolution; 1999; (14):92-94
  11. Martin P., Kaygorodova I., Sherbakov D.Yu., Verheyen E. Rapidly evolving lineages impede the resolution of phylogenetic relationships among Clitellata (Annelida). // Mol. Phylogen. Evol.; 2000; 15(3):355-368.
  12. Semovski S.V.,Bukin Yu.S., Sherbakov D.Yu. Speciation in one-dimensional population : adaptive dynamics and neutral molecular evolution. // Electronic jornal ' Investigated in Russia'; 2002; 125e():1397-1402.
  13. Hidding B., Michel E., Natyaganova A.V., Sherbakov D.Yu. Molecular evidence reveals a polyphyletic origin and chromosomal speciation of Lake Baikal's endemic asselid isopods. // Molecular Ecology ; 2003; (12):1509-1514.
  14. Papusheva E. P. , Sherbakov D.Yu., Sitnikova T. Ya. , Zubakov D.Yu., Blinov A.G., Starobogatov Ya.I. Molecular phylogeny of the genus Choanomphalus (Pulmonata: Planorbidae). // Ruthenica; 2003; 13(1):75-80
  15. Stift M., Michel El., Sitnikova T., Mamonova E., Sherbakov D. Palaeartic gastropod gains a foothold in the dominion of endemics : range expansion and morphological change of Lymnaea (Radix) auricularia in Lake Baikal. //J. Hydrobiology; 2004; (513):101-108